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Tuesday, March 8, 2022

03-08-2022-1502 - intrinsically disordered protein, cryptobiosis, exopolysaccharides, extracellular polymeric substances, acid, windscale fire, graphite, abiotic, decomposition, wigner effect, veterinary drug, natron, ostwald ripening, nucleation, metastable, self-asssembly, cloning, etc..

 The Wigner effect (named for its discoverer, Eugene Wigner),[1] also known as the discomposition effect or Wigner's disease,[2] is the displacement of atoms in a solid caused by neutron radiation.

Any solid can display the Wigner effect. The effect is of most concern in neutron moderators, such as graphite, intended to reduce the speed of fast neutrons, thereby turning them into thermal neutrons capable of sustaining a nuclear chain reaction involving uranium-235.

https://en.wikipedia.org/wiki/Wigner_effect

Decomposition or rot is the process by which dead organic substances are broken down into simpler organic or inorganic matter such as carbon dioxidewater, simple sugars and mineral salts. The process is a part of the nutrient cycle and is essential for recycling the finite matter that occupies physical space in the biosphere. Bodies of living organisms begin to decompose shortly after death. Animals, such as worms, also help decompose the organic materials. Organisms that do this are known as decomposers. Although no two organisms decompose in the same way, they all undergo the same sequential stages of decomposition. The science which studies decomposition is generally referred to as taphonomy from the Greek word taphos, meaning tomb. Decomposition can also be a gradual process for organisms that have extended periods of dormancy.[1]

One can differentiate abiotic from biotic substance (biodegradation). The former means "degradation of a substance by chemical or physical processes, e.g., hydrolysis.[2] The latter means "the metabolic breakdown of materials into simpler components by living organisms",[3] typically by microorganisms.

https://en.wikipedia.org/wiki/Decomposition

Graphite (/ˈɡræfaɪt/), archaically referred to as plumbago,[6] is a crystalline form of the element carbon with its atoms arranged in a hexagonal structure. It occurs naturally in this form and is the most stable form of carbon under standard conditions. Under high pressures and temperatures it converts to diamond. Graphite is used in pencils and lubricants. It is a good conductor of heat and electricity. Its high conductivity makes it useful in electronic products such as electrodesbatteries, and solar panels.

https://en.wikipedia.org/wiki/Graphite

The Windscale fire of 10 October 1957 was the worst nuclear accident in the United Kingdom's history, and one of the worst in the world, ranked in severity at level 5 out of a possible 7 on the International Nuclear Event Scale.[1] The fire took place in Unit 1 of the two-pile Windscale facility on the northwest coast of England in Cumberland (now SellafieldCumbria). The two graphite-moderated reactors, referred to at the time as "piles," had been built as part of the British post-war atomic bomb project. Windscale Pile No. 1 was operational in October 1950, followed by Pile No. 2 in June 1951.[4]

The fire burned for three days and released radioactive fallout which spread across the UK and the rest of Europe.[5] The radioactive isotope iodine-131, which may lead to cancer of the thyroid, was of particular concern at the time. It has since come to light that small but significant amounts of the highly dangerous radioactive isotope polonium-210 were also released.[6][5] It is estimated that the radiation leak may have caused 240 additional cancer cases, with 100 to 240 of these being fatal.[1][2][3]

At the time of the incident, no one was evacuated from the surrounding area, but milk from about 500 square kilometres (190 sq mi) of the nearby countryside was diluted and destroyed for about a month due to concerns about its radiation exposure. The UK government played down the events at the time, and reports on the fire were subject to heavy censorship, as Prime Minister Harold Macmillan feared the incident would harm British-American nuclear relations.[3]

The event was not an isolated incident; there had been a series of radioactive discharges from the piles in the years leading up to the accident.[7] In the spring of 1957, only months before the fire, there was a leak of radioactive material in which strontium-90 isotopes were released into the environment.[8][9] Like the later fire, this incident was also covered up by the British government.[8] Later studies on the release of radioactive material due to the Windscale fire revealed that much of the contamination had resulted from such radiation leaks before the fire.[7]

A 2010 study of workers involved in the cleanup of the accident found no significant long-term health effects from their involvement.[10][11]

https://en.wikipedia.org/wiki/Windscale_fire

An acid is a molecule or ion capable of either donating a proton (i.e., hydrogen ion, H+), known as a Brønsted–Lowry acid, or, capable of forming a covalent bond with an electron pair, known as a Lewis acid.[1]

The first category of acids are the proton donors, or Brønsted–Lowry acids. In the special case of aqueous solutions, proton donors form the hydronium ion H3O+ and are known as Arrhenius acidsBrønsted and Lowry generalized the Arrhenius theory to include non-aqueous solvents. A Brønsted or Arrhenius acid usually contains a hydrogen atom bonded to a chemical structure that is still energetically favorable after loss of H+.

https://en.wikipedia.org/wiki/Acid#Dissociation_and_equilibrium

Extracellular polymeric substances (EPSs) are natural polymers of high molecular weight secreted by microorganisms into their environment.[1] EPSs establish the functional and structural integrity of biofilms, and are considered the fundamental component that determines the physicochemical properties of a biofilm.[2]

EPSs are mostly composed of polysaccharides (exopolysaccharides) and proteins, but include other macromolecules such as DNAlipids and humic substances. EPSs are the construction material of bacterial settlements and either remain attached to the cell's outer surface, or are secreted into its growth medium. These compounds are important in biofilm formation and cells' attachment to surfaces. EPSs constitute 50% to 90% of a biofilm's total organic matter.[2][3][4]

Exopolysaccharides (also sometimes abbreviated EPSsEPS sugars thereafter) are the sugar-based parts of EPSs. Microorganisms synthesize a wide spectrum of multifunctional polysaccharides including intracellular polysaccharides, structural polysaccharides and extracellular polysaccharides or exopolysaccharides. Exopolysaccharides generally consist of monosaccharides and some non-carbohydrate substituents (such as acetatepyruvatesuccinate, and phosphate). Owing to the wide diversity in composition, exopolysaccharides have found diverse applications in various food and pharmaceutical industries. Many microbial EPS sugars provide properties that are almost identical to the gums currently in use. With innovative approaches, efforts are underway to supersede the traditionally used plant and algal gums by their microbial counterparts. Moreover, considerable progress has been made in discovering and developing new microbial EPS sugars that possess novel industrial applications.[5] Levan produced by Pantoea agglomerans ZMR7 was reported to decrease the viability of rhabdomyosarcoma (RD) and breast cancer (MDA) cells compared with untreated cancer cells. In addition, it has high antiparasitic activity against the promastigote of Leishmania tropica.[6]

https://en.wikipedia.org/wiki/Extracellular_polymeric_substance

Cryptobiosis or anabiosis is a metabolic state of life entered by an organism in response to adverse environmental conditions such as desiccationfreezing, and oxygen deficiency. In the cryptobiotic state, all measurable metabolic processes stop, preventing reproduction, development, and repair. When environmental conditions return to being hospitable, the organism will return to its metabolic state of life as it was prior to the cryptobiosis.

Forms[edit]

Anhydrobiosis[edit]

File:Desiccation-Tolerance-in-the-Tardigrade-Richtersius-coronifer-Relies-on-Muscle-Mediated-Structural-pone.0085091.s001.ogv
Anhydrobiosis in the tardigrade Richtersius coronifer

Anhydrobiosis is the most studied form of cryptobiosis and occurs in situations of extreme desiccation. The term anhydrobiosis derives from the Greek for "life without water" and is most commonly used for the desiccation tolerance observed in certain invertebrate animals such as bdelloid rotiferstardigradesbrine shrimpnematodes, and at least one insect, a species of chironomid (Polypedilum vanderplanki). However, other life forms exhibit desiccation tolerance. These include the resurrection plant Craterostigma plantagineum,[1] the majority of plant seeds, and many microorganisms such as bakers' yeast.[2] Studies have shown that some anhydrobiotic organisms can survive for decades, even centuries, in the dry state.[3]

Invertebrates undergoing anhydrobiosis often contract into a smaller shape and some proceed to form a sugar called trehalose. Desiccation tolerance in plants is associated with the production of another sugar, sucrose. These sugars are thought to protect the organism from desiccation damage.[4] In some creatures, such as bdelloid rotifers, no trehalose has been found, which has led scientists to propose other mechanisms of anhydrobiosis, possibly involving intrinsically disordered proteins.[5]

In 2011, Caenorhabditis elegans, a nematode that is also one of the best-studied model organisms, was shown to undergo anhydrobiosis in the dauer larva stage.[6] Further research taking advantage of genetic and biochemical tools available for this organism revealed that in addition to trehalose biosynthesis, a set of other functional pathways is involved in anhydrobiosis at the molecular level.[7] These are mainly defense mechanisms against reactive oxygen species and xenobiotics, expression of heat shock proteins and intrinsically disordered proteins as well as biosynthesis of polyunsaturated fatty acids and polyamines. Some of them are conserved among anhydrobiotic plants and animals, suggesting that anhydrobiotic ability may depend on a set of common mechanisms. Understanding these mechanisms in detail might enable modification of non-anhydrobiotic cells, tissues, organs or even organisms so that they can be preserved in a dried state of suspended animation over long time periods.

As of 2004, such an application of anhydrobiosis is being applied to vaccines. In vaccines, the process can produce a dry vaccine that reactivates once it is injected into the body. In theory, dry-vaccine technology could be used on any vaccine, including live vaccines such as the one for measles. It could also potentially be adapted to allow a vaccine's slow release, eliminating the need for boosters. This proposes to eliminate the need for refrigerating vaccines, thus making dry vaccines more widely available throughout the developing world where refrigeration, electricity, and proper storage are less accessible.[8]

Based on similar principles, lyopreservation has been developed as a technique for preservation of biological samples at ambient temperatures.[9][10] Lyopreservation is a biomimetic strategy based on anhydrobiosis to preserve cells at ambient temperatures. It has been explored as an alternative technique for cryopreservation. The technique has the advantages of being able to preserve biological samples at ambient temperatures, without the need for refrigeration or use of cryogenic temperatures.[11][12]

Anoxybiosis[edit]

In situations lacking oxygen (a.k.a., anoxia), many cryptobionts (such as M. tardigradum) take in water and become turgid and immobile, but can survive for prolonged periods of time. Some ectothermic vertebrates and some invertebrates, such as brine shrimps,[13] copepods,[14] nematodes,[15] and sponge gemmules,[16] are capable of surviving in a seemingly inactive state during anoxic conditions for months to decades.

Studies of the metabolic activity of these idling organisms during anoxia have been mostly inconclusive. This is because it is difficult to measure very small degrees of metabolic activity reliably enough to prove a cryptobiotic state rather than ordinary metabolic rate depression (MRD). Many experts are skeptical of the biological feasibility of anoxybiosis, as the organism is managing to prevent damage to its cellular structures from the environmental negative free energy, despite being both surrounded by plenty of water and thermal energy and without using any free energy of its own. However, there is evidence that the stress-induced protein p26 may act as a protein chaperone that requires no energy in cystic Artemia franciscana (sea monkey) embryos, and most likely an extremely specialized and slow guanine polynucleotide pathway continues to provide metabolic free energy to the A. franciscana embryos during anoxic conditions. It seems that A. franciscana approaches but does not reach true anoxybiosis.[17]

Chemobiosis[edit]

Chemobiosis is the cryptobiotic response to high levels of environmental toxins. It has been observed in tardigrades.[18]

Cryobiosis[edit]

Cryobiosis is a form of cryptobiosis that takes place in reaction to decreased temperature. Cryobiosis initiates when the water surrounding the organism's cells has been frozen. Stopping molecule mobility allows the organism to endure the freezing temperatures until more hospitable conditions return. Organisms capable of enduring these conditions typically feature molecules that facilitate freezing of water in preferential locations while also prohibiting the growth of large ice crystals that could otherwise damage cells.[citation needed] One such organism is the lobster.[19]

Osmobiosis[edit]

Osmobiosis is the least studied of all types of cryptobiosis. Osmobiosis occurs in response to increased solute concentration in the solution the organism lives in. Little is known for certain, other than that osmobiosis appears to involve a cessation of metabolism.[18]

Examples[edit]

The brine shrimp Artemia salina, which can be found in the Makgadikgadi Pans in Botswana,[20] survives over the dry season when the water of the pans evaporates, leaving a virtually desiccated lake bed.

The tardigrade, or water bear, can undergo all five types of cryptobiosis. While in a cryptobiotic state, its metabolism reduces to less than 0.01% of what is normal, and its water content can drop to 1% of normal.[21] It can withstand extreme temperatureradiation, and pressure while in a cryptobiotic state.[22]

Some nematodes and rotifers can also undergo cryptobiosis.[23]

See also[edit]

https://en.wikipedia.org/wiki/Cryptobiosis

An intrinsically disordered protein (IDP) is a protein that lacks a fixed or ordered three-dimensional structure,[2][3][4] typically in the absence of its macromolecular interaction partners, such as other proteins or RNA. IDPs range from fully unstructured to partially structured and include random coilmolten globule-like aggregates, or flexible linkers in large multi-domain proteins. They are sometimes considered as a separate class of proteins along with globularfibrous and membrane proteins.[5]

The discovery of IDPs has disproved the idea that three-dimensional structures of proteins must be fixed to accomplish their biological functions. The dogma of rigid protein structure has been abandoned due to the increasing evidence of dynamics being necessary for the protein machines. Despite their lack of stable structure, IDPs are a very large and functionally important class of proteins. Many IDPs can adopt a fixed three-dimensional structure after binding to other macromolecules. Overall, IDPs are different from structured proteins in many ways and tend to have distinctive function, structure, sequence, interactions, evolution and regulation.[6]

https://en.wikipedia.org/wiki/Intrinsically_disordered_proteins


Natron is a naturally occurring mixture of sodium carbonate decahydrate (Na2CO3·10H2O, a kind of soda ash) and around 17% sodium bicarbonate (also called baking soda, NaHCO3) along with small quantities of sodium chloride and sodium sulfate. Natron is white to colourless when pure, varying to gray or yellow with impurities. Natron deposits are sometimes found in saline lake beds which arose in arid environments. Throughout history natron has had many practical applications that continue today in the wide range of modern uses of its constituent mineral components.

In modern mineralogy the term natron has come to mean only the sodium carbonate decahydrate (hydrated soda ash) that makes up most of the historical salt.

https://en.wikipedia.org/wiki/Natron

https://en.wikipedia.org/wiki/List_of_veterinary_drugs


Ostwald ripening is a phenomenon observed in solid solutions or liquid sols that describes the change of an inhomogeneous structure over time, i.e., small crystals or sol particles dissolve, and redeposit onto larger crystals or sol particles.[3]

Dissolution of small crystals or sol particles and the redeposition of the dissolved species on the surfaces of larger crystals or sol particles was first described by Wilhelm Ostwald in 1896.[4][5] For colloidal systems, Ostwald ripening is also found in water-in-oil emulsions, while flocculation is found in oil-in-water emulsions.[6]

https://en.wikipedia.org/wiki/Ostwald_ripening

Nucleation is the first step in the formation of either a new thermodynamic phase or a new structure via self-assembly or self-organization. Nucleation is typically defined to be the process that determines how long an observer has to wait before the new phase or self-organized structure appears. For example, if a volume of water is cooled (at atmospheric pressure) below 0 °C, it will tend to freeze into ice, but volumes of water cooled only a few degrees below 0 °C often stay completely free of ice for long periods. At these conditions, nucleation of ice is either slow or does not occur at all. However, at lower temperatures nucleation is fast, and ice crystals appear after little or no delay.[1][2] Nucleation is a common mechanism which generates first-order phase transitions, and it is the start of the process of forming a new thermodynamic phase. In contrast, new phases at continuous phase transitions start to form immediately.

Nucleation is often very sensitive to impurities in the system. These impurities may be too small to be seen by the naked eye, but still can control the rate of nucleation. Because of this, it is often important to distinguish between heterogeneous nucleation and homogeneous nucleation. Heterogeneous nucleation occurs at nucleation sites on surfaces in the system.[1] Homogeneous nucleation occurs away from a surface.

https://en.wikipedia.org/wiki/Nucleation


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