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Tuesday, September 14, 2021

09-14-2021-0448 - DRAFT - Template & Categories at p14ARF, Vesicle-associated membrane protein Membrane-spanning 4A Arrestin Myelin Pulmonary surfactant CSF Tetraspanin Other/ungrouped Synaptobrevin Single-pass transmembrane proteins - Drafting

External links[edit]

Tumor+Suppressor+Protein+p14ARF at the US National Library of Medicine Medical Subject Headings (MeSH)

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Tumor suppressor genes and Oncogenes

Ligand

Growth factors

ONCO

c-Sis/PDGF HGF

Receptor

Wnt signaling pathway

TSP

CDH1

Hedgehog signaling pathway

TSP

PTCH1

TGF beta signaling pathway

TSP

TGF beta receptor 2

Receptor tyrosine kinase

ONCO

ErbB/c-ErbB HER2/neu Her 3 c-Met c-Ret

JAK-STAT signaling pathway

ONCO

c-Kit Flt3

Intracellular signaling P+Ps

Wnt signaling pathway

ONCO

Beta-catenin

TSP

APC

TGF beta signaling pathway

TSP

SMAD2 SMAD4

Akt/PKB signaling pathway

ONCO

c-Akt

TSP

PTEN

Hippo signaling pathway

TSP

Neurofibromin 2/Merlin

MAPK/ERK pathway

ONCO

c-Ras HRAS c-Raf

TSP

Neurofibromin 1

Other/unknown

ONCO

c-Src

TSP

Maspin

Nucleus

Cell cycle

ONCO

CDK4 Cyclin D Cyclin E

TSP

p53 pRb WT1 p16/p14arf

DNA repair/Fanconi

TSP

BRCA1 BRCA2

Ubiquitin ligase

ONCO

CBL MDM2

TSP

VHL

Transcription factor

ONCO

AP-1 c-Fos c-Jun c-Myc

TSP

KLF6

Mitochondrion

Apoptosis inhibitor

SDHB SDHD

Other/ungrouped

c-Bcl-2 Notch Stathmin

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Cell cycle proteins

Cyclin

A (A1, A2) B (B1, B2, B3) D (D1, D2, D3) E (E1, E2)

CDK

1 2 3 4 5 6 7 8 9 10 CDK-activating kinase

CDK inhibitor

INK4a/ARF (p14arf/p16, p15, p18, p19) cip/kip (p21, p27, p57)

P53 p63 p73 family

p53 p63 p73

Other

Cdc2 Cdc25 Cdc42 Cellular apoptosis susceptibility protein E2F Maturation promoting factor Wee Cullin (CUL7)

Phases and

checkpoints

Interphase

G1 phase S phase G2 phase

M phase

Mitosis (Preprophase Prophase Prometaphase Metaphase Anaphase Telophase) Cytokinesis

Cell cycle checkpoints

Restriction point Spindle checkpoint Postreplication checkpoint

Other cellular phases

Apoptosis G0 phase Meiosis

Categories: Genes on human chromosome 9


https://en.wikipedia.org/wiki/P14arf


Protein: cell membrane proteins (other than Cell surface receptor, enzymes, and cytoskeleton)

Arrestin

SAG ARRB1 ARRB2 ARR3

Membrane-spanning 4A

MS4A1 MS4A2 MS4A3 MS4A4A MS4A4E MS4A5 MS4A6A MS4A6E MS4A7 MS4A8B MS4A9 MS4A10 MS4A12 MS4A13 MS4A14 MS4A15 MS4A18

Myelin

Myelin basic protein PMP2 Myelin proteolipid protein PLP1 Myelin oligodendrocyte glycoprotein Myelin-associated glycoprotein Myelin protein zero

Pulmonary surfactant

Pulmonary surfactant-associated protein B Pulmonary surfactant-associated protein C

Tetraspanin

TSPAN1 TSPAN2 TSPAN3 TSPAN4 TSPAN5 TSPAN6 TSPAN7 TSPAN8 TSPAN9 TSPAN10 TSPAN11 TSPAN12 TSPAN13 TSPAN14 TSPAN15 TSPAN16 TSPAN17 TSPAN18 TSPAN19 TSPAN20 TSPAN21 TSPAN22 TSPAN23 TSPAN24 TSPAN25 TSPAN26 TSPAN27 TSPAN28 TSPAN29 TSPAN30 TSPAN31 TSPAN32 TSPAN33 TSPAN34

Other/ungrouped

Calnexin LDL-receptor-related protein-associated protein Neurofibromin 2 Presenilin PSEN1 PSEN2 HFE Phospholipid transfer proteins Dysferlin STRC OTOF

see also other cell membrane protein disorders

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Membrane protein: vesicular transport proteins (TC 1F)

Synaptic vesicle

SNARE

Q-SNARE

SNAP25 SNAP29

Syntaxin STX1A STX1B STX2 STX3 STX4 STX5 STX6 STX7 STX8 STX10 STX11 STX12 STX16 STX17 STX18 STX19

Munc-18: STXBP1 STXBP2 STXBP3 STXBP4 STXBP5 STXBP6

R-SNARE

Synaptobrevin/VAMP: VAMP1 VAMP2 VAMP3

Synaptotagmin

SYT1 SYT2 SYT3 SYT4 SYT5 SYT6 SYT7 SYT8 SYT9 SYT10 SYT11 SYT12 SYT13 SYT14 SYT15 SYT16 SYT17

Other

Synaptophysin Synapsin

Small GTPase: RAB3A

COPI

Coatomer COPA COPB1 COPB2 COPD/Archain COPE COPG COPG2 COPZ1 COPZ2

Small GTPase: ARF

COPII

Coatomer SEC23A/SEC24A SEC13/SEC31

Small GTPase: SAR1A

RME/Clathrin

CLTA CLTB CLTC

Caveolae

Caveolin (CAV1 CAV2 CAV3)

Other/ungrouped

Vesicle formation

Adaptor protein complex 1:

AP1AR AP1B1 AP1G1 AP1G2 AP1M1 AP1M2 AP1S1 AP1S2 AP1S3

Adaptor protein complex 2:

AP2A1 AP2A2 AP2B1 AP2M1 AP2S1

Adaptor protein complex 3:

AP3B1 AP3B2 AP3D1 AP3M1 AP3M2 AP3S1 AP3S2

Adaptor protein complex 4:

AP4B1 AP4E1 AP4M1 AP4S1

LMAN1

LYST

BLOC-1:

DTNBP1 BLOC153

BLOC-2:

HPS3 HPS5 HPS6

BLOC-3:

HPS1 HPS4

Coats:

Retromer TIP47

Small GTPase

Dynamin DNM1 DNM2 DNM3

Other

EHD protein family: EHD1 EHD2 EHD3 EHD4

Sorting nexins

Vacuolar protein sorting: VPS13B VPS33B

SYNRG

See also vesicular transport protein disorders

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Acetylcholine metabolism and transport modulators

Enzyme

(modulators)

ChAT

Inhibitors: 1-(-Benzoylethyl)pyridinium 2-(α-Naphthoyl)ethyltrimethylammonium 3-Chloro-4-stillbazole 4-(1-Naphthylvinyl)pyridine Acetylseco hemicholinium-3 Acryloylcholine AF64A B115 BETA CM-54,903 N,N-Dimethylaminoethylacrylate N,N-Dimethylaminoethylchloroacetate

AChE

Inhibitors: Reversible: Carbamates: Aldicarb Aminocarb Bendiocarb Bufencarb Carbaryl Carbendazim Carbetamide Carbofuran Carbosulfan Chlorbufam Chloropropham Dimetilan Ethienocarb Ethiofencarb Fenobucarb Formetanate Formparanate Methiocarb Methomyl Metolcarb Miotine Oxamyl Phenmedipham Pinmicarb Pirimicarb Promecarb Propamocarb Propham Propoxur Thiodicarb Thiofanox; Stigmines: Distigmine Eptastigmine Ganstigmine Neostigmine Phenserine Physostigmine Pyridostigmine Quilostigmine Rivastigmine Terestigmine; Others: Acotiamide Ambenonium Caffeine Donepezil EA-3990 EA-4056 Edrophonium Galantamine Huperzine A Huprine W Huprine X Huprine Y Ipidacrine Itopride Ladostigil Minaprine Octamethylene-bis(5-dimethylcarbamoxyisoquinolinium bromide) T-1123 TL-599 TL-1238 Tacrine Zanapezil

Irreversible: Organophosphates: 2-Ethoxycarbonyl-1-methylvinyl cyclohexyl methylphosphonate Acephate Armine Azinphos-ethyl Azinphos-methyl BAY-29952 Bensulide Cadusafos Carbophenothion Chlorethoxyfos Chlorfenvinphos Chlorpyrifos Chlorpyrifos-methyl Coumaphos Crotylsarin Cyanophos Cyclosarin (GF) Demephion Demeton Demeton-S-methyl Dialifor Diazinon Dichlorvos Dicrotophos Diisopropylphosphate Dimefox Dimethoate Dimethyl 4-(methylthio)phenyl phosphate Dioxathion Disulfoton EA-2012 EA-2054 EA-2098 EA-2192 EA-2613 EA-3148 EA-4352 Echothiophate Ethylsarin (GE) Endothion EPN Ethion Ethoprop Fenamiphos Fenitrothion Fenthion Fluorotabun Fonofos Formothion Fosthiazate GD-42 GH GT-45 GV Guanitoxin Hexaethyl tetraphosphate (HETP) Isofluorophate Isoxathion Leptophos Malaoxon Malathion Mazidox Methamidophos Methidathion Methyl phenkapton Methylfluorophosphonylcholine (MFPCh) Metrifonate Mevinphos Mipafox Monocrotophos Naled Novichok agent Omethoate Oxydemeton-methyl Paraoxon Parathion Parathion-methyl Phorate Phosalone Phosfolan Phosmet Phosphamidon Phoxim Pirimiphos-methyl Profenofos Prothoate R-16661 Ro 3-0340 Ro 3-0346 Ro 3-0347 Ro 3-0351 Ro 3-0352 Ro 3-0397 Ro 3-0411 Ro 3-0412 Ro 3-0417 Ro 3-0419 Ro 3-0422 Ro 3-0433 Ronnel Sarin (GB) Schradan Soman (GD) Sulfotep (TEDP) Tabun (GA) Tebupirimfos Temefos Terbufos Tetrachlorvinphos Tetraethyl pyrophosphate (TEPP) Triazofos Tribufos Trichlorfon Trichloronate Tricresyl phosphate VE VG VM VP VS VR VX; Others: Demecarium Fasciculins (green mamba toxins) (1, 2, 3, 4) Onchidal (Onchidella binneyi) Methanesulfonyl fluoride

Unsorted: α-Pinene α-Viniferin Affinine Affinisine Arisugacin A Bulbocapnine Conodurine Coronaridine Corydaline Corynoline Crimidine Cyclanoline Cymserine Harmaline Kobophenol A Lactucopicrin Lycorine Phosacetim Rosmarinic acid Stercuronium iodide Taspine Tetrahydrocannabinol Ungeremine Ungiminorine Dimethylcarbamoyl fluoride BW284C51 TMTFA

Reactivators: Asoxime chloride Methoxime Obidoxime Pralidoxime Trimedoxime bromide

BChE

Inhibitors: Affinine Affinisine Conodurine Cymserine Ladostigil Profenamine (ethopropazine) Rivastigmine Tacrine ZINC-12613047 Many of the other AChE inhibitors listed above

Transporter

(modulators)

CHT

Inhibitors: Hemicholinium-3 (hemicholine) Triethylcholine

Enhancers: Coluracetam

VAChT

Inhibitors: Vesamicol

Release

(modulators)

Inhibitors

SNAP-25 inactivators: Botulinum toxin (A, C, E)

VAMP inactivators: Botulinum toxin (B, D, F, G)

Others: Bungarotoxins (β-bungarotoxin, γ-bungarotoxin)

Enhancers

LPHN agonists: α-Latrotoxin

Others: Atracotoxins (e.g., robustoxin, versutoxin) Crotoxin

See also: Receptor/signaling modulators • Muscarinic acetylcholine receptor modulators • Nicotinic acetylcholine receptor modulators



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Categories: Membrane proteinsMembrane protein stubs

https://en.wikipedia.org/wiki/Vesicle-associated_membrane_protein


External links[edit]

Synaptobrevin at the US National Library of Medicine Medical Subject Headings (MeSH)

Myobloc (rimabotulinumtoxinB) Prescribing Information

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Membrane protein: vesicular transport proteins (TC 1F)

Synaptic vesicle

SNARE

Q-SNARE

SNAP25 SNAP29

Syntaxin STX1A STX1B STX2 STX3 STX4 STX5 STX6 STX7 STX8 STX10 STX11 STX12 STX16 STX17 STX18 STX19

Munc-18: STXBP1 STXBP2 STXBP3 STXBP4 STXBP5 STXBP6

R-SNARE

Synaptobrevin/VAMP: VAMP1 VAMP2 VAMP3

Synaptotagmin

SYT1 SYT2 SYT3 SYT4 SYT5 SYT6 SYT7 SYT8 SYT9 SYT10 SYT11 SYT12 SYT13 SYT14 SYT15 SYT16 SYT17

Other

Synaptophysin Synapsin

Small GTPase: RAB3A

COPI

Coatomer COPA COPB1 COPB2 COPD/Archain COPE COPG COPG2 COPZ1 COPZ2

Small GTPase: ARF

COPII

Coatomer SEC23A/SEC24A SEC13/SEC31

Small GTPase: SAR1A

RME/Clathrin

CLTA CLTB CLTC

Caveolae

Caveolin (CAV1 CAV2 CAV3)

Other/ungrouped

Vesicle formation

Adaptor protein complex 1:

AP1AR AP1B1 AP1G1 AP1G2 AP1M1 AP1M2 AP1S1 AP1S2 AP1S3

Adaptor protein complex 2:

AP2A1 AP2A2 AP2B1 AP2M1 AP2S1

Adaptor protein complex 3:

AP3B1 AP3B2 AP3D1 AP3M1 AP3M2 AP3S1 AP3S2

Adaptor protein complex 4:

AP4B1 AP4E1 AP4M1 AP4S1

LMAN1

LYST

BLOC-1:

DTNBP1 BLOC153

BLOC-2:

HPS3 HPS5 HPS6

BLOC-3:

HPS1 HPS4

Coats:

Retromer TIP47

Small GTPase

Dynamin DNM1 DNM2 DNM3

Other

EHD protein family: EHD1 EHD2 EHD3 EHD4

Sorting nexins

Vacuolar protein sorting: VPS13B VPS33B

SYNRG

See also vesicular transport protein disorders

Categories: Protein domainsProtein familiesSingle-pass transmembrane proteins

https://en.wikipedia.org/wiki/Synaptobrevin


Zero ionic layer is the main site of interaction in the core SNARE complexDipole-dipole interactions take place between 3 glutamine (Q) residues and 1 arginine (R) residue exposed in this layer. Despite that, the majority of the SNARE complex is hydrophobic because of the leucine zipper.[1] Extensively studied layers within the SNARE alpha-helical bundle are designated from "-7" to "+8". Zero ionic layer is at the center of the bundle, and thus designated as "0" layer.[2]

https://en.wikipedia.org/wiki/Zero_ionic_layer


https://en.wikipedia.org/w/index.php?title=Special:Search&limit=20&offset=20&profile=default&search=zero+dipole&ns0=1&searchToken=a0uxe9fl1p1mpqykx84iy22gq

Search: Zero Dipole (on Wikipedia)

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